Applied Bioinformatics Day 3

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nextflow
Author

Jay Håkansson

Published

October 8, 2025

Today’s topics: Nextflow

After developing a nextflow pipeline for 2 years, I feel like I’m intimately familiar with the language, but there’s always new things to learn! If anything, going through a tutorial makes it clear that you can structure and write things very differently.

I didn’t know about the account setting for executor scope previously. It seems to have been added during an update last year. This is definitely something I will use in my config files from now on when working on clusters that use SLURM.